- Author:
- 0Huitzil <frcastaneda@protonmail.com>
- Date:
- 2025-09-17 15:39:53+12:00
- Desc:
- Updated fiducial markers for nerves
- Permanent Source URI:
- https://staging.physiomeproject.org/workspace/add/rawfile/317fdad54e9aa42c0bd3e06b61ea9d9833d9364c/mapclient workflow/docs/heart_annotations.json
{
"general_settings": {},
"id": "scaffold creator settings",
"metadata": {
"annotations": [
{
"id": "UBERON:0003983",
"name": "conus arteriosus"
},
{
"id": "UBERON:0003369",
"name": "fossa ovalis"
},
{
"id": "ILX:0738358",
"name": "inferior vena cava inlet"
},
{
"id": "UBERON:0002085",
"name": "interatrial septum"
},
{
"id": "UBERON:0002094",
"name": "interventricular septum"
},
{
"id": "UBERON:0003380",
"name": "left atrium myocardium"
},
{
"id": "ILX:0744169",
"name": "left inferior pulmonary vein"
},
{
"id": "ILX:0745914",
"name": "left superior pulmonary vein"
},
{
"id": "UBERON:0006566",
"name": "left ventricle myocardium"
},
{
"id": "UBERON:0003379",
"name": "right atrium myocardium"
},
{
"id": "ILX:0742603",
"name": "right inferior pulmonary vein"
},
{
"id": "ILX:0745243",
"name": "right superior pulmonary vein"
},
{
"id": "UBERON:0006567",
"name": "right ventricle myocardium"
},
{
"id": "ILX:0738367",
"name": "superior vena cava inlet"
}
]
},
"scaffold_settings": {
"deleteElementRanges": "",
"scaffoldPackage": {
"_ScaffoldPackage": true,
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Atria base inner major axis length": 0.55,
"Atria base inner minor axis length": 0.42,
"Atria major axis rotation degrees": 40.0,
"Atria outer height": 0.4,
"Atria outer major arc up degrees": 100.0,
"Atria outer minor arc up degrees": 125.0,
"Atrial base slope degrees": 30.0,
"Atrial base wall thickness": 0.05,
"Atrial free wall thickness": 0.02,
"Atrial septum thickness": 0.06,
"Base height": 0.12,
"Base thickness": 0.06,
"Fibrous ring thickness": 0.01,
"Inferior vena cava inner diameter": 0.22,
"Inferior vena cava wall thickness": 0.015,
"LV apex thickness": 0.06,
"LV free wall thickness": 0.12,
"LV outer height": 0.95,
"LV outer radius": 0.5,
"LV outlet inner diameter": 0.3,
"LV outlet outer diameter": 0.35,
"LV outlet wall thickness": 0.025,
"Left pulmonary vein inner diameter": 0.11,
"Left pulmonary vein wall thickness": 0.009,
"Number of elements around LV free wall": 5,
"Number of elements around atria": 8,
"Number of elements around atrial septum": 2,
"Number of elements around ventricular septum": 7,
"Number of elements up LV apex": 1,
"Number of elements up atria": 4,
"Number of elements up ventricular septum": 4,
"RV arc around degrees": 200.0,
"RV extra cross radius base": 0.1,
"RV free wall thickness": 0.04,
"RV inner height": 0.8,
"RV outlet inner diameter": 0.27,
"RV outlet wall thickness": 0.025,
"RV width": 0.4,
"Refine": false,
"Refine number of elements surface": 4,
"Refine number of elements through LV wall": 1,
"Refine number of elements through RV wall": 1,
"Refine number of elements through atrial wall": 1,
"Right pulmonary vein inner diameter": 0.12,
"Right pulmonary vein wall thickness": 0.009,
"Superior vena cava inner diameter": 0.2,
"Superior vena cava wall thickness": 0.015,
"Use cross derivatives": false,
"Ventricles outlet element length": 0.1,
"Ventricles outlet incline degrees": 15.0,
"Ventricles outlet spacing": 0.04,
"Ventricular septum base radial displacement": 0.15,
"Ventricular septum thickness": 0.1
},
"scaffoldTypeName": "3D Heart 2",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
]
}
},
"segmentation_data_settings": {},
"version": "1.0.0"
}
